A global database of soil seed bank richness, density, and abundance

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dc.contributor.authorAlistair Auffret
dc.contributor.authorEmma Ladouceur
dc.contributor.authorNatalie Haussmann
dc.contributor.authorEirini Daouti
dc.contributor.authorTatiana Elumeeva
dc.contributor.authorIneta Kačergytė
dc.contributor.authorJonas Knape
dc.contributor.authorDorota Kotowska
dc.contributor.authorMatthew Low
dc.contributor.authorVladimir Onipchenko
dc.contributor.authorMatthieu Paquet
dc.contributor.authorDiana Rubene
dc.contributor.authorJan Plue
dc.date.accessioned2025-01-20T09:43:21Z
dc.date.available2025-01-20T09:43:21Z
dc.date.issued2024-08-06T08:55:17.295053Z
dc.descriptionA soil seed bank is the collective name for viable seeds that are stored naturally in the soil. This database is the result of a comprehensive literature search, including all seed bank studies from the Web of Science from which data could be extracted, as well as an additional search of the Russian language literature. The database contains information on the species richness, seed density and/or seed abundance in 3096 records from at least 1778 locations across the world’s seven continents, extracted from 1442 studies published between 1940 and 2020. Records are grouped into five broad habitat categories (aquatic, arable, forest, grassland and wetland), including information relating to habitat degradation from, or restoration to other habitats (total 14 combinations). Sampling protocols were also extracted for each record, and the database was extensively checked for errors. The location of each record was then used to extract summary climate data and biome classification from external published databases (Karger et al. 2017, 2018 and Olson et al. 2001, respectively). A full data descriptor for this dataset is published as a data paper in the journal Ecology. As such, the data are described according to the journal's specifications in the file MetadataS1.pdf, with additional information in data_entry_intructions.pdf. The initial version of the dataset is also published as supporting information to the data paper. The file DataS1.zip described in MetadataS1.zip contains the files gsb_db.csv, gsb_code.R and data_entry_intructions.pdf. References: Karger, D. N., O. Conrad, J. Böhner, T. Kawohl, H. Kreft, R. W. Soria-Auza, N. E. Zimmermann, H. P. Linder, and M. Kessler. 2017. Climatologies at high resolution for the earth’s land surface areas. Scientific Data 4:170122. https://doi.org/10.1038/sdata.2017.122 Karger, D. N., O. Conrad, J. Böhner, T. Kawohl, H. Kreft, R. W. Soria-Auza, N. E. Zimmermann, H. P. Linder, and M. Kessler. 2018. Data from: Climatologies at high resolution for the earth’s land surface areas. Dryad Digital Repository. http://dx.doi.org/doi:10.5061/dryad.kd1d4 Olson, D. M., E. Dinerstein, E. D. Wikramanayake, N. D. Burgess, G. V. N. Powell, E. C. Underwood, J. A. D’amico, I. Itoua, H. E. Strand, J. C. Morrison, C. J. Loucks, T. F. Allnutt, T. H. Ricketts, Y. Kura, J. F. Lamoreux, W. W. Wettengel, P. Hedao, and K. R. Kassem. 2001. Terrestrial Ecoregions of the World: A New Map of Life on Earth A new global map of terrestrial ecoregions provides an innovative tool for conserving biodiversity. BioScience 51:933–938. Link to data: https://files.worldwildlife.org/wwfcmsprod/files/Publication/file/6kcchn7e3u_official_teow.zipen_EN
dc.descriptionEn fröbank är namnet på de frön som vilar naturligt i jorden. Databasen innehåller data angående antalet arter, antalet frön samt densitet av frön per ytenhet från 1442 studier publicerade mellan 1940 och 2020. Studierna identifierades genom en bred sökning i Web of Science, samt en separat sökning av artiklar publicerade i det ryska språket. Databasen innehåller även information gällande livsmiljö, klimat och biom. Se även mer utförlig engelsk beskrivning. En databeskrivning för datamängden har publicerats som dataartikel i tidskriften Ecology. Därför beskrivs data enligt tidskriftens specifikationer i filen MetadataS1.pdf, med ytterligare information i data_entry_instructions.pdf. Den första versionen av datamängden publiceras parallellt som ett appendix till artikeln. Filen DataS1.zip som beskrivs i MetadataS1.pdf innehåller filerna gsb_db.csv, gsb_code.R and data_entry_intructions.pdf. Referenser: Karger, D. N., O. Conrad, J. Böhner, T. Kawohl, H. Kreft, R. W. Soria-Auza, N. E. Zimmermann, H. P. Linder, and M. Kessler. 2017. Climatologies at high resolution for the earth’s land surface areas. Scientific Data 4:170122. https://doi.org/10.1038/sdata.2017.122 Karger, D. N., O. Conrad, J. Böhner, T. Kawohl, H. Kreft, R. W. Soria-Auza, N. E. Zimmermann, H. P. Linder, and M. Kessler. 2018. Data from: Climatologies at high resolution for the earth’s land surface areas. Dryad Digital Repository. http://dx.doi.org/doi:10.5061/dryad.kd1d4 Olson, D. M., E. Dinerstein, E. D. Wikramanayake, N. D. Burgess, G. V. N. Powell, E. C. Underwood, J. A. D’amico, I. Itoua, H. E. Strand, J. C. Morrison, C. J. Loucks, T. F. Allnutt, T. H. Ricketts, Y. Kura, J. F. Lamoreux, W. W. Wettengel, P. Hedao, and K. R. Kassem. 2001. Terrestrial Ecoregions of the World: A New Map of Life on Earth A new global map of terrestrial ecoregions provides an innovative tool for conserving biodiversity. BioScience 51:933–938. Link to data: https://files.worldwildlife.org/wwfcmsprod/files/Publication/file/6kcchn7e3u_official_teow.zipsv_SE
dc.identifier.govdocSLU.ekol.2023.4.4.IÄ-17
dc.identifier.urihttps://doi.org/10.5878/bvs7-gk47
dc.identifier.urihttps://doi.org/10.5878/wy4r-yc25
dc.identifier.urihttps://hdl.handle.net/20.500.12703/5453
dc.languageotheren_EN
dc.publisherSwedish National Data Serviceen_EN
dc.publisherSvensk Nationell Datatjänstsv_SE
dc.subjectEcologyen_EN
dc.subjectEkologisv_SE
dc.subjectBiotaen_EN
dc.subjectBiologi och ekologisv_SE
dc.subjectBiological Sciencesen_EN
dc.subjectBiologisv_SE
dc.subjectNatural Sciencesen_EN
dc.subjectNaturvetenskapsv_SE
dc.subjectSpecies distributionen_EN
dc.subjectArters utbredningsv_SE
dc.subjectplantsen_EN
dc.subjectväxtersv_SE
dc.subjectbiodiversityen_EN
dc.subjectbiodiversitetsv_SE
dc.subjectbiological processen_EN
dc.subjectecosystem parameteren_EN
dc.subjectbiological systemen_EN
dc.subjectmatrixen_EN
dc.subjecteukaryoteen_EN
dc.subjecteukaryotersv_SE
dc.subjectnatural diversityen_EN
dc.subjectnaturens mångfaldsv_SE
dc.subjectparameteren_EN
dc.subjectprocessen_EN
dc.subjectorganizational uniten_EN
dc.subjectentityen_EN
dc.subjectorganismsen_EN
dc.subjectorganismersv_SE
dc.subjectdiversityen_EN
dc.subjectdiversitetsv_SE
dc.subjectobject of interesten_EN
dc.subjectorganic objectsen_EN
dc.subjectorganiska objektsv_SE
dc.subjectpropertiesen_EN
dc.subjectegenskapersv_SE
dc.subjectphysical objectsen_EN
dc.subjectfysiska objektsv_SE
dc.subjectobjectsen_EN
dc.subjectentitetersv_SE
dc.titleA global database of soil seed bank richness, density, and abundanceen_EN
dc.titleA global database of soil seed bank richness, density, and abundancesv_SE
dc.typeDatasetsv_SE
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A global database of soil seed bank richness, density, and abundance